Gene detail

Detailed information of OS493_011705-T1 in Lophelia pertusa

Genomic Location: scaffold_30:326659...332579
NR annotation: KAJ7336500.1, Ubiquitin thioesterase Zranb1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7M760	Ubiquitin thioesterase Zranb1 OS=Mus musculus OX=10090 GN=Zranb1 PE=2 SV=1
Q6NUB7	Ubiquitin thioesterase zranb1-B OS=Xenopus laevis OX=8355 GN=zranb1-b PE=2 SV=1
Q9UGI0	Ubiquitin thioesterase ZRANB1 OS=Homo sapiens OX=9606 GN=ZRANB1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009098 (this species only)
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18418 all species →	AnkUBD	Ankyrin ubiquitin-binding domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041294 all species →	Domain	Ankyrin ubiquitin-binding domain	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR051346 all species →	Family	OTU Domain-Containing Deubiquitinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13367 all species →	UBIQUITIN THIOESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0070530 all species →	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071947 all species →	Biological Process	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11862	ZRANB1, TRABID; ubiquitin thioesterase ZRANB1	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011705-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

40.8Max TPM

14.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.51	18.90
polyp at pH7 6	18	18	13.11	20.20
coral polyp · control treatment	16	16	19.76	40.81
coral polyp · oil and dispersant treatment	16	16	16.27	29.48
coral polyp · oil treatment	16	16	13.70	22.36
coral polyp · dispersant treatment	16	16	14.96	24.39
Polyp	10	10	7.68	13.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.24
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.09
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.33
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.22
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.87
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.47
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.34
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.51
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.12
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.71
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.43
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.94
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.65
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.61
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.63
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.11
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.04
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.94
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.54
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.87
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.81
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.77
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.54
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.10

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.