Detailed information of OS493_011714-T1 in Lophelia pertusa

Genomic Location: scaffold_30:385060...389112
NR annotation: KAJ7336509.1, ribosome biosynthesis protein [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q66L33Protein MAK16 homolog A OS=Xenopus laevis OX=8355 GN=mak16-a PE=2 SV=1
Q6P7N1Protein MAK16 homolog OS=Xenopus tropicalis OX=8364 GN=mak16 PE=2 SV=1
Q7ZYG5Protein MAK16 homolog B OS=Xenopus laevis OX=8355 GN=mak16-b PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005777 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01778
all species →		Ribosomal_L28eRibosomal L28e protein familyFamilyInterproscan
PF04874
all species →		Mak16Mak16 protein C-terminal regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006958
all species →		FamilyMak16 proteinInterproscan
IPR029004
all species →		DomainRibosomal eL28/Mak16Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23405
all species →		MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000460
all species →		Biological Processmaturation of 5.8S rRNAInterproscan
GO:0000470
all species →		Biological Processmaturation of LSU-rRNAInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0030687
all species →		Cellular Componentpreribosome, large subunit precursorInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_011714-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_011714-T1 global co-expression network
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