Gene detail

Detailed information of OS493_011738-T1 in Lophelia pertusa

Genomic Location: scaffold_30:870980...881239
NR annotation: KAJ7336528.1, Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09326	Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus OX=10116 GN=Mgat2 PE=1 SV=1
O19071	Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Sus scrofa OX=9823 GN=MGAT2 PE=3 SV=1
Q921V5	Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Mus musculus OX=10090 GN=Mgat2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008126 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05060 all species →	MGAT2	N-acetylglucosaminyltransferase II (MGAT2)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR007754 all species →	Family	N-acetylglucosaminyltransferase II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12871 all species →	BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005795 all species →	Cellular Component	Golgi stack	Interproscan
GO:0008455 all species →	Molecular Function	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	Interproscan
GO:0009312 all species →	Biological Process	oligosaccharide biosynthetic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00736	MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	EC:2.4.1.143	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011738-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

84.5Max TPM

28.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.10	27.34
polyp at pH7 6	18	18	17.74	25.16
coral polyp · control treatment	16	16	33.85	75.14
coral polyp · oil and dispersant treatment	16	16	54.20	84.53
coral polyp · oil treatment	16	16	32.55	54.49
coral polyp · dispersant treatment	16	16	26.79	69.12
Polyp	10	9	11.01	19.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.34
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.56
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.56
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.27
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.08
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.38
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.33
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.16
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.93
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.31
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.95
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.45
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.08
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.15
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.75
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.14
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.65
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.58
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.14
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.48
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.94
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.37
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.99
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.60
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.49
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.71
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.80
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.38
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.16
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.39
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.29
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.26
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.92
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.21
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.