Gene detail

Detailed information of OS493_011741-T1 in Lophelia pertusa

Genomic Location: scaffold_30:904585...909114
NR annotation: KAJ7336531.1, Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WU47	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Cricetulus griseus OX=10029 GN=B3GAT3 PE=2 SV=1
P58158	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Mus musculus OX=10090 GN=B3gat3 PE=1 SV=1
O94766	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Homo sapiens OX=9606 GN=B3GAT3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001397 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_011741-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR005027 all species →	Family	Glycosyl transferase, family 43	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10896 all species →	GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0015018 all species →	Molecular Function	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0050650 all species →	Biological Process	chondroitin sulfate proteoglycan biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011741-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011741-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

11.8Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.88	5.56
polyp at pH7 6	18	16	4.04	7.86
coral polyp · control treatment	16	16	7.28	11.79
coral polyp · oil and dispersant treatment	16	16	6.08	10.53
coral polyp · oil treatment	16	16	6.91	10.81
coral polyp · dispersant treatment	16	16	5.74	9.27
Polyp	10	10	4.72	7.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.41
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.78
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.34
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.47
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.95
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.05
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.53
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.22
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.66
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.81
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.80
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.50
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.23
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.54
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.44
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.46
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.43
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.01

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.