Gene detail

Detailed information of OS493_011776-T1 in Lophelia pertusa

Genomic Location: scaffold_30:1449205...1458281
NR annotation: KAJ7336562.1, WD repeat-containing protein 91 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05B30	WD repeat-containing protein 91 OS=Xenopus tropicalis OX=8364 GN=wdr91 PE=2 SV=1
Q5ZLL7	WD repeat-containing protein 91 OS=Gallus gallus OX=9031 GN=WDR91 PE=2 SV=1
B2RYI0	WD repeat-containing protein 91 OS=Rattus norvegicus OX=10116 GN=Wdr91 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005120 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_011776-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039724 all species →	Family	WD repeat-containing protein 91	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13083 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031313 all species →	Cellular Component	extrinsic component of endosome membrane	Interproscan
GO:0031901 all species →	Cellular Component	early endosome membrane	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0035014 all species →	Molecular Function	phosphatidylinositol 3-kinase regulator activity	Interproscan
GO:0043551 all species →	Biological Process	obsolete regulation of phosphatidylinositol 3-kinase activity	Interproscan
GO:0045022 all species →	Biological Process	early endosome to late endosome transport	Interproscan
GO:0051898 all species →	Biological Process	negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	Interproscan
GO:0141039 all species →	Molecular Function	phosphatidylinositol 3-kinase inhibitor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011776-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011776-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

21.4Max TPM

6.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.55	8.91
polyp at pH7 6	18	16	5.51	10.49
coral polyp · control treatment	16	16	10.47	21.37
coral polyp · oil and dispersant treatment	16	15	6.60	12.61
coral polyp · oil treatment	16	16	8.78	14.86
coral polyp · dispersant treatment	16	16	7.24	14.23
Polyp	10	8	3.05	6.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.48
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.49
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.59
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.53
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.56
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.40
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.07
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.74
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.38
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.91
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.34
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.81
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.75
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.32
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.54
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.