Gene detail

Detailed information of OS493_011777-T1 in Lophelia pertusa

Genomic Location: scaffold_30:1460736...1473599
NR annotation: KAJ7336563.1, WD repeat-containing protein 91 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R6T6	WD repeat-containing protein 91 OS=Pongo abelii OX=9601 GN=WDR91 PE=2 SV=1
A4D1P6	WD repeat-containing protein 91 OS=Homo sapiens OX=9606 GN=WDR91 PE=1 SV=2
Q2HJE1	WD repeat-containing protein 91 OS=Bos taurus OX=9913 GN=WDR91 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005120 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR039724 all species →	Family	WD repeat-containing protein 91	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13083 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0031313 all species →	Cellular Component	extrinsic component of endosome membrane	Interproscan
GO:0031901 all species →	Cellular Component	early endosome membrane	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0035014 all species →	Molecular Function	phosphatidylinositol 3-kinase regulator activity	Interproscan
GO:0043551 all species →	Biological Process	obsolete regulation of phosphatidylinositol 3-kinase activity	Interproscan
GO:0045022 all species →	Biological Process	early endosome to late endosome transport	Interproscan
GO:0051898 all species →	Biological Process	negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	Interproscan
GO:0141039 all species →	Molecular Function	phosphatidylinositol 3-kinase inhibitor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011777-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011777-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

50.8Max TPM

21.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	23.58	35.30
polyp at pH7 6	18	18	23.92	50.81
coral polyp · control treatment	16	16	23.64	38.14
coral polyp · oil and dispersant treatment	16	16	18.09	47.20
coral polyp · oil treatment	16	16	23.84	31.32
coral polyp · dispersant treatment	16	16	13.97	21.02
Polyp	10	10	21.25	34.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.11
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.79
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.36
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.90
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.52
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.81
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.71
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.34
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.37
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.42
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.43
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.58
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.80
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.42
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.22
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.77
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.32
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.82
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.71
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.63
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.32
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.41
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.16
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.11
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.10
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.20
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.52
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.87
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	34.25
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	32.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	24.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	24.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.47
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.46

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.