Genomic Location: scaffold_30:1491288...1528383
NR annotation: KAJ7336566.1, hypothetical protein OS493_011780 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families
| CDS |
| OS493_011780-T1 |
| Transcript |
| OS493_011780-T1 |
| Protein |
| OS493_011780-T1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003712 (this species only) |
OS493_011780-T1. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR052095 all species → | Family | UNC-13 domain-containing protein | Interproscan |
| IPR014772 all species → | Domain | Mammalian uncoordinated homology 13, domain 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45999 all species → | UNC-13-4A, ISOFORM B | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0099503 all species → | Cellular Component | secretory vesicle | Interproscan |
OS493_011780-T1.Transcript abundance of OS493_011780-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| polyp at pH7 9 | 18 | 18 | 32.77 | 55.04 | |
| polyp at pH7 6 | 18 | 18 | 33.00 | 59.65 | |
| coral polyp · control treatment | 16 | 16 | 47.80 | 125.41 | |
| coral polyp · oil and dispersant treatment | 16 | 16 | 49.59 | 153.69 | |
| coral polyp · oil treatment | 16 | 16 | 36.13 | 74.55 | |
| coral polyp · dispersant treatment | 16 | 16 | 26.65 | 55.88 | |
| Polyp | 10 | 10 | 9.70 | 18.70 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR11359523 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 55.04 |
| SRR11359522 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 54.83 |
| SRR11359518 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 46.55 |
| SRR11359519 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 44.86 |
| SRR11359521 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 40.13 |
| SRR11359520 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 39.95 |
| SRR11359498 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 38.20 |
| SRR11359499 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 37.55 |
| SRR11359510 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 37.44 |
| SRR11359511 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 36.42 |
| SRR11359496 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 29.49 |
| SRR11359497 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 29.46 |
| SRR11359508 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 19.28 |
| SRR11359494 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 19.27 |
| SRR11359509 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 18.74 |
| SRR11359495 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 18.48 |
| SRR11359507 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 12.62 |
| SRR11359506 | polyp at pH7 9 | not recorded | not recorded | not recorded | - | 11.59 |
| SRR11359528 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 59.65 |
| SRR11359529 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 58.78 |
| SRR11359516 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 39.52 |
| SRR11359517 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 38.87 |
| SRR11359505 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 38.28 |
| SRR11359504 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 38.11 |
| SRR11359515 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 37.79 |
| SRR11359527 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 37.52 |
| SRR11359514 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 37.51 |
| SRR11359526 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 37.03 |
| SRR11359500 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 23.45 |
| SRR11359501 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 23.36 |
| SRR11359503 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 23.26 |
| SRR11359502 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 22.17 |
| SRR11359524 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 21.14 |
| SRR11359513 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 19.75 |
| SRR11359525 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 19.44 |
| SRR11359512 | polyp at pH7 6 | not recorded | not recorded | not recorded | - | 18.37 |
| SRR16705990 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 125.41 |
| SRR16705971 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 102.76 |
| SRR16705965 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 95.29 |
| SRR16705973 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 68.71 |
| SRR16705957 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 51.62 |
| SRR16705943 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 48.78 |
| SRR16705942 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 38.87 |
| SRR16705972 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 37.61 |
| SRR16705960 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 35.01 |
| SRR16705975 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 32.67 |
| SRR16705974 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 29.17 |
| SRR16705946 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 24.14 |
| SRR16705970 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 21.94 |
| SRR16705991 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 19.14 |
| SRR16705992 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 17.60 |
| SRR16705989 | coral polyp · control treatment | coral polyp | polyp | control treatment | SRP344271 | 16.11 |
| SRR16705995 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 153.69 |
| SRR16705945 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 104.87 |
| SRR16705993 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 80.40 |
| SRR16705977 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 76.59 |
| SRR16705948 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 55.20 |
| SRR16705979 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 41.56 |
| SRR16705997 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 38.19 |
| SRR16705976 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 33.95 |
| SRR16705944 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 33.27 |
| SRR16706005 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 32.77 |
| SRR16705996 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 31.87 |
| SRR16705982 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 26.45 |
| SRR16705947 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 26.30 |
| SRR16705978 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 23.82 |
| SRR16706004 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 20.06 |
| SRR16705994 | coral polyp · oil and dispersant treatment | coral polyp | polyp | oil and dispersant treatment | SRP344271 | 14.43 |
| SRR16705981 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 74.55 |
| SRR16706001 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 58.20 |
| SRR16705999 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 57.98 |
| SRR16705952 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 51.38 |
| SRR16705984 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 48.94 |
| SRR16705964 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 36.06 |
| SRR16705998 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 34.96 |
| SRR16705950 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 31.30 |
| SRR16705961 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 29.31 |
| SRR16706000 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 28.13 |
| SRR16705951 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 24.69 |
| SRR16705962 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 23.76 |
| SRR16705983 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 21.92 |
| SRR16705949 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 21.14 |
| SRR16705963 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 18.11 |
| SRR16705980 | coral polyp · oil treatment | coral polyp | polyp | oil treatment | SRP344271 | 17.71 |
| SRR16705954 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 55.88 |
| SRR16705967 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 55.34 |
| SRR16705959 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 43.44 |
| SRR16705956 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 40.83 |
| SRR16705986 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 36.51 |
| SRR16705988 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 31.94 |
| SRR16705969 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 29.02 |
| SRR16705958 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 22.89 |
| SRR16706003 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 21.12 |
| SRR16705955 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 20.15 |
| SRR16706002 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 19.75 |
| SRR16705968 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 17.24 |
| SRR16705966 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 14.56 |
| SRR16705987 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 11.12 |
| SRR16705985 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 4.92 |
| SRR16705953 | coral polyp · dispersant treatment | coral polyp | polyp | dispersant treatment | SRP344271 | 1.75 |
| SRR23025713 | Polyp | not recorded | not recorded | not recorded | - | 18.70 |
| SRR23025711 | Polyp | not recorded | not recorded | not recorded | - | 15.56 |
| SRR23025709 | Polyp | not recorded | not recorded | not recorded | - | 14.93 |
| SRR23025710 | Polyp | not recorded | not recorded | not recorded | - | 13.38 |
| SRR23025708 | Polyp | not recorded | not recorded | not recorded | - | 11.19 |
| SRR7746666 | Polyp | not recorded | not recorded | not recorded | - | 7.55 |
| SRR7746669 | Polyp | not recorded | not recorded | not recorded | - | 4.15 |
| SRR23025712 | Polyp | not recorded | not recorded | not recorded | - | 4.02 |
| SRR7746668 | Polyp | not recorded | not recorded | not recorded | - | 3.81 |
| SRR7746667 | Polyp | not recorded | not recorded | not recorded | - | 3.74 |
Source: CnidoSite RNA-seq expression matrices (LPERT_TPM,
StringTie quantification over 110 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.