Detailed information of OS493_011780-T1 in Lophelia pertusa

Genomic Location: scaffold_30:1491288...1528383
NR annotation: KAJ7336566.1, hypothetical protein OS493_011780 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003712 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_011780-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR052095
all species →
FamilyUNC-13 domain-containing proteinInterproscan
IPR014772
all species →
DomainMammalian uncoordinated homology 13, domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45999
all species →
UNC-13-4A, ISOFORM BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0099503
all species →
Cellular Componentsecretory vesicleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_011780-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011780-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples
110TPM > 0
7Conditions
153.7Max TPM
34.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
polyp at pH7 9 18 18 32.77 55.04
polyp at pH7 6 18 18 33.00 59.65
coral polyp · control treatment 16 16 47.80 125.41
coral polyp · oil and dispersant treatment 16 16 49.59 153.69
coral polyp · oil treatment 16 16 36.13 74.55
coral polyp · dispersant treatment 16 16 26.65 55.88
Polyp 10 10 9.70 18.70

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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