Gene detail

Detailed information of OS493_011790-T1 in Lophelia pertusa

Genomic Location: scaffold_30:1640154...1651731
NR annotation: KAJ7336576.1, Fibroblast growth factor receptor 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18460	Fibroblast growth factor receptor 3 OS=Gallus gallus OX=9031 GN=FGFR3 PE=2 SV=1
Q90Z00	Fibroblast growth factor receptor 1-A OS=Danio rerio OX=7955 GN=fgfr1a PE=1 SV=2
Q8JG38	Fibroblast growth factor receptor 2 OS=Danio rerio OX=7955 GN=fgfr2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000215 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR052615 all species →	Family	Fibroblast growth factor receptor-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19890 all species →	FIBROBLAST GROWTH FACTOR RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26107	FGFRL1, FGFR5; fibroblast growth factor receptor-like 1	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011790-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

180.8Max TPM

50.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	35.36	54.75
polyp at pH7 6	18	18	38.46	61.75
coral polyp · control treatment	16	16	52.63	121.45
coral polyp · oil and dispersant treatment	16	16	57.07	112.30
coral polyp · oil treatment	16	16	51.80	81.53
coral polyp · dispersant treatment	16	16	92.40	180.85
Polyp	10	10	19.46	29.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.75
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.06
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.06
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.78
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.63
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.52
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.45
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.54
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.40
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.57
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	112.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.96
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.06
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.38
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.02
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.26
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.11
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.56
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.86
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.28
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.71
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	180.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	139.38
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	137.97
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.20
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.71
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.89
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.54
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	24.54
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.43

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.