Gene detail

Detailed information of OS493_011803-T1 in Lophelia pertusa

Genomic Location: scaffold_30:1838373...1844478
NR annotation: KAJ7336587.1, Fibroblast growth factor receptor 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JG38	Fibroblast growth factor receptor 2 OS=Danio rerio OX=7955 GN=fgfr2 PE=1 SV=1
Q90Z00	Fibroblast growth factor receptor 1-A OS=Danio rerio OX=7955 GN=fgfr1a PE=1 SV=2
Q26614	Fibroblast growth factor receptor OS=Strongylocentrotus purpuratus OX=7668 GN=FGFR PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000215 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR052615 all species →	Family	Fibroblast growth factor receptor-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19890 all species →	FIBROBLAST GROWTH FACTOR RECEPTOR	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_011803-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011803-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011803-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

94TPM > 0

7Conditions

5.2Max TPM

1.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	1.43	4.27
polyp at pH7 6	18	14	1.90	4.79
coral polyp · control treatment	16	16	1.60	3.20
coral polyp · oil and dispersant treatment	16	15	0.69	2.07
coral polyp · oil treatment	16	14	0.91	3.02
coral polyp · dispersant treatment	16	13	0.95	5.18
Polyp	10	8	1.12	3.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.38
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.63
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.15
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.83
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.97
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.48
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.34
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.40
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.33
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.61
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.20
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.18
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.35
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.56
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.78
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.60
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.25
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.