Gene detail

Detailed information of OS493_011894-T1 in Lophelia pertusa

Genomic Location: scaffold_30:2860328...2865432
NR annotation: KAJ7336673.1, BCL2 adenovirus E1B 19 kDa protein-interacting protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O55003	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 OS=Mus musculus OX=10090 GN=Bnip3 PE=1 SV=1
Q12983	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 OS=Homo sapiens OX=9606 GN=BNIP3 PE=1 SV=4
Q32KN2	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 OS=Bos taurus OX=9913 GN=BNIP3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007474 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06553 all species →	BNIP3	BNIP3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010548 all species →	Family	BNIP3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15186 all species →	RE48077P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005740 all species →	Cellular Component	mitochondrial envelope	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0043065 all species →	Biological Process	positive regulation of apoptotic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0043067 all species →	Biological Process	regulation of programmed cell death	Interproscan
GO:0097345 all species →	Biological Process	mitochondrial outer membrane permeabilization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15464	BNIP3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011894-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

115.0Max TPM

36.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.07	39.91
polyp at pH7 6	18	18	24.77	36.56
coral polyp · control treatment	16	16	51.79	115.04
coral polyp · oil and dispersant treatment	16	16	58.21	92.05
coral polyp · oil treatment	16	16	42.22	68.91
coral polyp · dispersant treatment	16	16	27.60	47.49
Polyp	10	10	22.92	31.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.56
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.88
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.22
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.79
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.55
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.84
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.57
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.67
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.64
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.33
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.83
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.43
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.04
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.67
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.74
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.07
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.99
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.36
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.99
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.47
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.05
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.42
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.22
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.75
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.48
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.27
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.06
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.73
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.87
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.97
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	31.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	25.26
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.37
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.