Gene detail

Detailed information of OS493_011910-T1 in Lophelia pertusa

Genomic Location: scaffold_30:3083928...3086966
NR annotation: KAJ7336688.1, Ankyrin repeat domain-containing protein 53 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BQI6	SMC5-SMC6 complex localization factor protein 1 OS=Homo sapiens OX=9606 GN=SLF1 PE=1 SV=2
A6QR20	SMC5-SMC6 complex localization factor protein 1 OS=Bos taurus OX=9913 GN=SLF1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008790 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR042335 all species →	Family	Ankyrin repeat domain-containing protein 53	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24160 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 53	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0007080 all species →	Biological Process	mitotic metaphase chromosome alignment	Interproscan
GO:0031116 all species →	Biological Process	positive regulation of microtubule polymerization	Interproscan
GO:0060236 all species →	Biological Process	regulation of mitotic spindle organization	Interproscan
GO:1902412 all species →	Biological Process	regulation of mitotic cytokinesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21441	ANKRD53; ankyrin repeat domain-containing protein 53	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011910-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

11.2Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.77	5.76
polyp at pH7 6	18	17	2.37	4.11
coral polyp · control treatment	16	16	4.14	11.24
coral polyp · oil and dispersant treatment	16	15	3.10	6.63
coral polyp · oil treatment	16	16	3.77	7.93
coral polyp · dispersant treatment	16	16	3.42	7.15
Polyp	10	9	1.50	2.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.82
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.93
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.51
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.19
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.24
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.09
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.65
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.40
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.94
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.35
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.69
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.40
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.97
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.