Gene detail

Detailed information of OS493_011911-T1 in Lophelia pertusa

Genomic Location: scaffold_30:3088191...3088736
NR annotation: KAJ7336689.1, Mimitin, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009421 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05071 all species →	NDUFA12	NADH ubiquinone oxidoreductase subunit NDUFA12	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052618 all species →	Family	Complex I NDUFA12 subunit	Interproscan
IPR007763 all species →	Family	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32470 all species →	ADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0032981 all species →	Biological Process	mitochondrial respiratory chain complex I assembly	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18160	NDUFAF2; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011911-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

35.1Max TPM

13.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.68	20.78
polyp at pH7 6	18	18	13.12	19.93
coral polyp · control treatment	16	16	16.39	35.07
coral polyp · oil and dispersant treatment	16	16	11.92	34.48
coral polyp · oil treatment	16	16	18.02	24.61
coral polyp · dispersant treatment	16	16	8.19	15.01
Polyp	10	10	14.62	26.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.85
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.18
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.15
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.38
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.89
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.01
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.01
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.60
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.18
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.88
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.19
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.54
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.12
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.98
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.50
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.75
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.06
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.06
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.15
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.80
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.54
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.40
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.35
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	22.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.59
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.10
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.76

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.