Gene detail

Detailed information of OS493_011920-T1 in Lophelia pertusa

Genomic Location: scaffold_30:3175886...3180028
NR annotation: KAJ7336698.1, hypothetical protein OS493_011920 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0IJ33	E3 ubiquitin-protein ligase TM129 OS=Xenopus tropicalis OX=8364 GN=tmem129 PE=2 SV=1
Q6IR55	E3 ubiquitin-protein ligase TM129 OS=Xenopus laevis OX=8355 GN=tmem129 PE=2 SV=1
Q8K304	E3 ubiquitin-protein ligase TM129 OS=Mus musculus OX=10090 GN=Tmem129 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008627 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10272 all species →	Tmpp129	Putative transmembrane protein precursor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018801 all species →	Family	E3 ubiquitin-protein ligase TM129	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31322 all species →	E3 UBIQUITIN-PROTEIN LIGASE TM129	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011920-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011920-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

16.0Max TPM

4.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.75	7.11
polyp at pH7 6	18	17	4.85	10.20
coral polyp · control treatment	16	16	5.23	16.01
coral polyp · oil and dispersant treatment	16	16	3.14	5.23
coral polyp · oil treatment	16	16	4.62	7.51
coral polyp · dispersant treatment	16	16	2.43	5.17
Polyp	10	10	7.20	10.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.44
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.13
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.11
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.81
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.23
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.19
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.59
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.80
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.34
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.12

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.