Gene detail

Detailed information of OS493_011933-T1 in Lophelia pertusa

Genomic Location: scaffold_30:3358280...3365445
NR annotation: KAJ7336711.1, hypothetical protein OS493_011933 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86Z20	Coiled-coil domain-containing protein 125 OS=Homo sapiens OX=9606 GN=CCDC125 PE=1 SV=2
Q5U465	Coiled-coil domain-containing protein 125 OS=Mus musculus OX=10090 GN=Ccdc125 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009261 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_011933-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR034608 all species →	Family	Coiled-coil domain-containing protein 125	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28616 all species →	COILED-COIL DOMAIN-CONTAINING PROTEIN 125	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035024 all species →	Biological Process	negative regulation of Rho protein signal transduction	Interproscan
GO:2000145 all species →	Biological Process	regulation of cell motility	Interproscan
GO:2000146 all species →	Biological Process	negative regulation of cell motility	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011933-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011933-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

32.5Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.34	15.14
polyp at pH7 6	18	18	6.87	11.75
coral polyp · control treatment	16	16	14.52	32.51
coral polyp · oil and dispersant treatment	16	16	10.73	19.17
coral polyp · oil treatment	16	16	14.93	25.23
coral polyp · dispersant treatment	16	16	6.38	17.10
Polyp	10	9	4.71	11.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.67
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.75
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.73
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.15
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.76
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.44
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.33
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.84
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.67
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.16
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.74
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.35
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.81
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.79
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.87
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.09
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.34
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.14
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.33
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.56
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.