Gene detail

Detailed information of OS493_011966-T1 in Lophelia pertusa

Genomic Location: scaffold_31:247940...254717
NR annotation: KAJ7392309.1, hypothetical protein OS493_011966 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002028 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15074 all species →	DUF4541	Domain of unknown function (DUF4541)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027901 all species →	Family	Cilia and flagella associated protein 90	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34444 all species →	LOC361192	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_011966-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011966-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011966-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

50.3Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.71	14.05
polyp at pH7 6	18	11	2.70	6.75
coral polyp · control treatment	16	16	12.74	50.31
coral polyp · oil and dispersant treatment	16	15	8.63	18.64
coral polyp · oil treatment	16	16	10.00	22.96
coral polyp · dispersant treatment	16	15	13.27	21.42
Polyp	10	9	5.99	12.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.51
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.57
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.19
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.71
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.93
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.93
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.54
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.98
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.76
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.62
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.47
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.92
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.26
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.93
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.82
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.