Gene detail

Detailed information of OS493_011969-T1 in Lophelia pertusa

Genomic Location: scaffold_31:278115...285929
NR annotation: KAJ7392312.1, hypothetical protein OS493_011969, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007397 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773 all species →	RWD	RWD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006575 all species →	Domain	RWD domain	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR40237 all species →	LD44813P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011969-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011969-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

51.6Max TPM

16.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.61	25.78
polyp at pH7 6	18	16	21.38	51.61
coral polyp · control treatment	16	16	18.11	25.05
coral polyp · oil and dispersant treatment	16	16	17.47	25.59
coral polyp · oil treatment	16	16	19.73	38.50
coral polyp · dispersant treatment	16	16	9.26	16.39
Polyp	10	9	15.36	27.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.78
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.51
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.19
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.92
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.14
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.61
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.88
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.96
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.03
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.47
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.53
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.75
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.87
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.08
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.45
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.21
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.11
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.08
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.24
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.07
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.92
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	27.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.54
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.31
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.