Gene detail

Detailed information of OS493_012016-T1 in Lophelia pertusa

Genomic Location: scaffold_31:886853...905128
NR annotation: KAJ7392357.1, Bromodomain-containing protein 8 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_012016-T1

ATGGCGGCCTCCACGCTAAGTCAAAAGCAAAAGCTACCTCCAGGCCAAAACCCAGATGAATGGACGATAAGAGAAAAACTAACGTTAGCTTCGTCTGTGGTCCGAAGTGGCGATCAAAACTGGGTGTCTGTGAGTCGTACTATTAAACCTGTGCTTGAAACAGGATGTTGTGCAAAACCAAGGCCACCTGACTTCTTTTCACAAAAGAACTGTGCATCACACTACTCTGAAATGCTTGAAAAGGTCAACACACCAAAGAGAAAAAGAACCACTGAAGGAGGGGGAACTGAAACACCCGGGGATCAAATTGTTAGAAAACTGACATTTGAGCGGATTGAGGAATTGAAGAAGTCTATCAGGAATGATCAGCTTACCTACAAGAAGCTTAAAGATAGAATAGAGGATGTCCGAGGTGGAAAACTAGACCATCAATTACCGGCTTTATGGGAAGAAATTAAAATAAGGAAAAAGATGAGGCCACCACCACCTGTGCCTCAACAAGAGGGAGATGGGTCTGCTCCCATTACACCCATTACACCCACCACGCCTACAATGCCCATCACCCCTACTACTCCTGGAGGACAACCAGGGATGCAGCCAGGTGCTCTAAAACCTCAAGGAAGTCAGCCAATGTCCTCTCCGAAAGGAAAGCAGTTGAGAGTTCCAAAACCAACAGCAAAATTTCAAAAGTATCAACAACAGCTCCAGCAGAGGTCACATGGCCACTCTTCTCAGTCCTCGCCTTTAAGCCAGACACCAGAGGGACTGGTCACCACTTCTGACCGATCCCCTATGGATGGAGGAACTTTTTCACTGGGGCTTGGAGGAGGACCACAGGGTGGACTGGGACAAAGTGGAACATTTCCAGGTGGAGCTCAGCTTTCTAAAGGAGAACCTATGGATGTGGATGTAGGAAGCACTGGCTCCCAAGGTGAAATGGTCCCTCCTCAGGTATCACCTCGAAGAACGGATCATATACCACAAAGTCCTGTAAGACAACAGAGCAGTGCTTTACAAGCAGTGACAGCCAGCTCTCAGGGTTCTAATGAATCTTCTTTGGTGTCGTTGCTATCGCAGCGATCTGCAAAAGACAGCAAACAGTTAAGAAGGCCCAGTAATACTGACCAGGAAATGCCCTCAACTAAGGAGCTTGAGCGTCGTTCCTCTTTAGGTGGTCAGCCATCTCAGACTGCCTCTCCTAACACTCCACCACATTCAACAGCATCCCAACATACACAAGGTGCTGGACAGACTTCAAACTCCCAAAATTCTGATGGAAAGCATTTTTTAGGGGTAGCTCCCTCCATGGAGTCCAAAAAACTGGATTCCATGAGGGAGAGACAAGGAAGCACACCACAAGTCGCAGCGCCATCAGTCAGCGCACCTACACTTTCTAAACTATTGGCTGAAACACCCACAGCAACATCTTCATCCATGAATTCTGTATCATCACTTGGAGGAGCACTAACTAAGGCCCCAGGAGTAATGGAGTCAACATTGTTGGTCGAGACTTCCACAGGGACACCAGTTGATGCCTCTGTACCTGTGATTGGTGGAGGCAGGGGCTCCACAGGAGGTACTCAAGGTATCCTGAGTGTATCAACATCTGTACCAGCCATCTCAGTTAACCCTAAGGCTGCTCTAACTGCAACACTGCCCTCCCCTCTGGCAATTACACCCCCGCCCACTACTCCTCCAGCAGACAGAAAGGAAATGATAACTCAAAAGTTTGAACCAACACTCAAGATTTCTGAGAAACACAGCGGTACAGAAATTATAACCAGCAACAGTCTTGAAAATGACGCCAGCACCTCTGAACGGTCATCAGTCATCCCTGAAGTGAAAGTAGAAACTATCGAGACCCCAGTCTCCTCTCCTCGAGTCACTAAACGTGCATCCAAGCCCGGGAGGCCTGGTCGACCACCAAAGGCAGTGAGAAGAAATCAACGAAGTCGCAGCAAATCTGCGACCTCCACGGATAACGAAGGTGACTTTGAAGAGGAACAGGAAGAGGAATCCAAATTCGAGTCATTGGATGTCGAGTCTGAGAAAGCAGCAAGTGAAAAAACCGAGGATGAGGATGAGAATGATTCAGCTGCCGAGGACAAGAAGGATGATAGTGATGAGGAGATGGAGCAAGACAGCGCAGATGAGGGAGGAGTGTCCGACTCGGGAGAACGGAGCCAGTCTGAGAAGGATGAGCCGGGGACCTCCATGAAAGACTTCCTTTTAGACAGGGCCAGGATGGGGGGCTCGGAATCGGTGCCCGGTAGCCCCGCCTCTCAAATATCCCAGGGAAGCAGCGACGAACACGAAGCCCTTCAAGCGCAGAAAACATGGAAGAAGTCAATCATGCTGGTGTGGAGAGCCGCAGCCAATCACAAATATGCAAATGTGTTCCTGCATCCAGTAACTGACGATGAAGCACCAGGATACCATAGCGTTGTTTTCAGACCTATGGATCTCTTAACAATAAAAAAGAACATTGAAAATGGAACCATTCGTACAACAAGCGAGTTCCAAAGAGACATGATGTTAATGTTTCAGAATGCTCTCATGTATAACAGCGCTGATCACGATGTGTACCGAATGGCGGAAGAAATGCGAGACGATGTTATGGAACAAATTCAGTCCTACATTGCAACTCAGATTATGGTTGATTCGAAGATGTTACGAGGCCACAGACAGGATGTTTTTCACATCTTTCTATGA

Transcript

OS493_012016-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R3B7	Bromodomain-containing protein 8 OS=Mus musculus OX=10090 GN=Brd8 PE=1 SV=2
Q9H0E9	Bromodomain-containing protein 8 OS=Homo sapiens OX=9606 GN=BRD8 PE=1 SV=2
Q9LXA7	Transcription factor GTE2 OS=Arabidopsis thaliana OX=3702 GN=GTE2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002902 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR037966 all species →	Domain	Brd8, Bromo domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15398 all species →	BROMODOMAIN-CONTAINING PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0035267 all species →	Cellular Component	NuA4 histone acetyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11321	BRD8; bromodomain-containing protein 8	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_012016-T1 global co-expression network