Gene detail

Detailed information of OS493_012110-T1 in Lophelia pertusa

Genomic Location: scaffold_31:1919486...1933026
NR annotation: KAJ7392446.1, Attractin-like protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6A051	Attractin-like protein 1 OS=Mus musculus OX=10090 GN=Atrnl1 PE=1 SV=2
O75882	Attractin OS=Homo sapiens OX=9606 GN=ATRN PE=1 SV=2
Q99J86	Attractin OS=Rattus norvegicus OX=10116 GN=Atrn PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002032 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR051568 all species →	Family	LZTR1/Attractin	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46376 all species →	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012110-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012110-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

48.4Max TPM

25.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.59	35.33
polyp at pH7 6	18	18	24.45	32.97
coral polyp · control treatment	16	16	31.33	47.56
coral polyp · oil and dispersant treatment	16	16	26.91	48.38
coral polyp · oil treatment	16	16	30.08	44.18
coral polyp · dispersant treatment	16	16	21.26	36.01
Polyp	10	10	20.74	38.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.97
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.29
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.13
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.88
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.27
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.96
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.75
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.38
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.88
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.13
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.86
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.88
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.69
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.20
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.51
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.33
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.38
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.09
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.01
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.63
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.59
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	38.43
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	37.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	33.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	24.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.82
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.66

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.