Detailed information of OS493_012111-T1 in Lophelia pertusa

Genomic Location: scaffold_31:1934937...1956350
NR annotation: KAJ7392447.1, hypothetical protein OS493_012111 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9WU60Attractin OS=Mus musculus OX=10090 GN=Atrn PE=1 SV=3
Q99J86Attractin OS=Rattus norvegicus OX=10116 GN=Atrn PE=2 SV=1
O75882Attractin OS=Homo sapiens OX=9606 GN=ATRN PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002032 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13415
all species →		Kelch_3Galactose oxidase, central domainRepeatInterproscan
PF01344
all species →		Kelch_1Kelch motifRepeatInterproscan
PF13418
all species →		Kelch_4Galactose oxidase, central domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051568
all species →		FamilyLZTR1/AttractinInterproscan
IPR011043
all species →		Homologous_superfamilyGalactose oxidase/kelch, beta-propellerInterproscan
IPR015915
all species →		Homologous_superfamilyKelch-type beta propellerInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR006652
all species →		RepeatKelch repeat type 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46376
all species →		LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005794
all species →		Cellular ComponentGolgi apparatusInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_012111-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_012111-T1 global co-expression network
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