Gene detail

Detailed information of OS493_012143-T1 in Lophelia pertusa

Genomic Location: scaffold_31:2273426...2277405
NR annotation: KAJ7392477.1, hypothetical protein OS493_012143 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001583 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_012143-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036423 all species →	Homologous_superfamily	Superoxide dismutase-like, copper/zinc binding domain superfamily	Interproscan
IPR053257 all species →	Family	Cu-only superoxide dismutase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20910 all species →	AGAP001623-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006801 all species →	Biological Process	superoxide metabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012143-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012143-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

155.3Max TPM

66.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	54.00	71.97
polyp at pH7 6	18	18	48.36	69.29
coral polyp · control treatment	16	16	89.56	155.26
coral polyp · oil and dispersant treatment	16	16	79.16	124.98
coral polyp · oil treatment	16	16	75.91	116.64
coral polyp · dispersant treatment	16	16	72.70	106.17
Polyp	10	10	41.42	66.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.97
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.47
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.12
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.60
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.66
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.58
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.14
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.88
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.05
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	155.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	130.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.66
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.68
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.61
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	124.98
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.92
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.45
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.57
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.42
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.86
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	116.64
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	106.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	104.52
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.67
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.29
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.17
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	93.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.79
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	66.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	64.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	64.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	40.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	37.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	33.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	28.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.