Detailed information of OS493_012148-T1 in Lophelia pertusa

Genomic Location: scaffold_31:2370881...2371988
NR annotation: KAJ7392482.1, DNA-directed RNA polymerase II subunit RPB2 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A5PJW8DNA-directed RNA polymerase II subunit RPB2 OS=Bos taurus OX=9913 GN=POLR2B PE=1 SV=1
P30876DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE=1 SV=1
Q8CFI7DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001360 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04561
all species →		RNA_pol_Rpb2_2RNA polymerase Rpb2, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037034
all species →		Homologous_superfamilyRNA polymerase Rpb2, domain 2 superfamilyInterproscan
IPR007642
all species →		DomainRNA polymerase Rpb2, domain 2Interproscan

 PANTHER
No PANTHER signature was detected for OS493_012148-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003899
all species →		Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351
all species →		Biological ProcessDNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_012148-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_012148-T1 global co-expression network
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