Detailed information of OS493_012189-T1 in Lophelia pertusa

Genomic Location: scaffold_31:2947848...2956635
NR annotation: KAJ7392518.1, hypothetical protein OS493_012189 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A6NDR6Putative homeobox protein Meis3-like 1 OS=Homo sapiens OX=9606 GN=MEIS3P1 PE=5 SV=2
Q99687Homeobox protein Meis3 OS=Homo sapiens OX=9606 GN=MEIS3 PE=1 SV=3
P97368Homeobox protein Meis3 OS=Mus musculus OX=10090 GN=Meis3 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000714 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05920
all species →		Homeobox_KNHomeobox KN domainFamilyInterproscan
PF16878
all species →		SIX1_SDTranscriptional regulator, SIX1, N-terminal SD domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR008422
all species →		DomainHomeobox KN domainInterproscan
IPR031701
all species →		DomainHomeobox protein SIX1, N-terminal SD domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10390
all species →		HOMEOBOX PROTEIN SIXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005667
all species →		Cellular Componenttranscription regulator complexInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_012189-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_012189-T1 global co-expression network
TOP