Gene detail

Detailed information of OS493_012190-T1 in Lophelia pertusa

Genomic Location: scaffold_31:2960989...2964931
NR annotation: KAJ7392519.1, Phosphatidate phosphatase ppapdc1b [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VBU9	Phospholipid phosphatase 4 OS=Mus musculus OX=10090 GN=Plpp4 PE=2 SV=1
Q5VZY2	Phospholipid phosphatase 4 OS=Homo sapiens OX=9606 GN=PLPP4 PE=1 SV=2
Q8NEB5	Phospholipid phosphatase 5 OS=Homo sapiens OX=9606 GN=PLPP5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009732 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01569 all species →	PAP2	PAP2 superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000326 all species →	Domain	Phosphatidic acid phosphatase type 2/haloperoxidase	Interproscan
IPR036938 all species →	Homologous_superfamily	Phosphatidic acid phosphatase type 2/haloperoxidase superfamily	Interproscan
IPR043216 all species →	Family	Phosphatidate (PA) phosphatase-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10165 all species →	LIPID PHOSPHATE PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006644 all species →	Biological Process	phospholipid metabolic process	Interproscan
GO:0008195 all species →	Molecular Function	phosphatidate phosphatase activity	Interproscan
GO:0046839 all species →	Biological Process	phospholipid dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18693	DPP1, DPPL, PLPP4_5; diacylglycerol diphosphate phosphatase / phosphatidate phosphatase	EC:3.6.1.75 EC:3.1.3.4	Glycerophospholipid metabolism	ko00564	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012190-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

17.4Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.04	4.72
polyp at pH7 6	18	18	4.10	8.50
coral polyp · control treatment	16	16	7.37	12.11
coral polyp · oil and dispersant treatment	16	16	7.71	17.42
coral polyp · oil treatment	16	16	6.37	9.92
coral polyp · dispersant treatment	16	16	6.51	11.22
Polyp	10	9	2.31	4.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.54
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.02
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.33
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.99
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.65
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.71
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.59
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.42
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.93
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.90
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.93
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.86
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.10
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.29
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.