Gene detail

Detailed information of OS493_012194-T1 in Lophelia pertusa

Genomic Location: scaffold_31:3009689...3012748
NR annotation: KAJ7392523.1, hypothetical protein OS493_012194 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NTM9	Copper homeostasis protein cutC homolog OS=Homo sapiens OX=9606 GN=CUTC PE=1 SV=1
Q9D8X1	Copper homeostasis protein cutC homolog OS=Mus musculus OX=10090 GN=Cutc PE=1 SV=1
A6L8P3	PF03932 family protein CutC OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=cutC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004101 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03932 all species →	CutC	CutC family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036822 all species →	Homologous_superfamily	CutC-like domain superfamily	Interproscan
IPR005627 all species →	Family	CutC-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12598 all species →	COPPER HOMEOSTASIS PROTEIN CUTC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012194-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012194-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

60.1Max TPM

20.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.74	38.01
polyp at pH7 6	18	16	16.29	29.56
coral polyp · control treatment	16	16	27.95	53.45
coral polyp · oil and dispersant treatment	16	16	19.28	60.12
coral polyp · oil treatment	16	16	26.94	49.71
coral polyp · dispersant treatment	16	16	17.82	35.08
Polyp	10	9	16.06	30.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.51
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.87
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.97
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.57
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.46
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.27
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.68
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.10
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.08
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.22
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.05
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.69
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.12
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.11
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.42
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.09
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.64
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.98
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.21
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.22
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.19
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.