Gene detail

Detailed information of OS493_012277-T1 in Lophelia pertusa

Genomic Location: scaffold_32:360388...380814
NR annotation: KAJ7385948.1, Prolactin receptor [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_012277-T1

ATGGTCCTACCAAAACCAGCCATGTACACTGGAGGAAATAAACCGAAACTTCGAGCTGTAATGCTCCAAAATGTCGCAGGACTTCATTATATTTGTATCACGGCTCAAAAGCCACCAGCAAACATCGACAACCTTTCCGTGCCAGCACTGACAGATTCCGATCACAGTGAGCACCCTAAGGACCCAGACCTCGGCGTCCATTTACCACGAACAAGCAGCAGATCGTCACAAGGAGAGGAATTATACAACGGTGAAGATTCTCCGGAGAGAGACTGTAATCAAACACCGAGCACACCGCCTTTTAAAACCACCAAGAGTATCTCCACATCGACAGAGGATATCGTGAGCACCACAACCAAAGAAGATAAATCCACGTCAACAGATGATTTAGTAAGCTTTGAGGTGAATACTGAATCTGCTGAAAGCTCAGACAATGAGAATAACGACATATGCGTGGGGTCTGAGTACCAGGCTACAAATCTGACTGATGCGAATAAAGTTCAGTTCTTGCAAAAAGAGCTTCTCGCCATTCAAACACAGAGTGTTCAAGAAAGAAGGAAATTTAGCGACACGCGAAGATACTGGACTGATCCAATGATAGCTAATAATGTAGGTGTGAATGAACTGCAAAGGGCATCAAGTTCACCAAGTGTATTAGATGGGTGTGGACAGAGAACCGCTGACAACAATAACTGTCGTGTAAAAGATGGCGCGACCTTTCCTAGACGTCGAGTGTCGGACGGGAATAACCCTCTGTCACCTGAATTTATTCCACGTTCACGACCCTCCTCATTCAATGATGCGGAGCTAACTACAGTCCCTGAGGTGACTATTTCACCAGATGAAGAGTGTAATGAAAGTGAAGAGAGTTCCAGATCACCGTCTCCTTCTTCAAGGCATTCCCAAGATGATCTGGCGTCAAGTTCCTCGTCACCAGTTCCCTCTCCAACAAATGACGAACTTCCGGCTCCCCAGAGATCACCGCGGGCTTCACCCCTGACTTTTGACGTGATCAGTGCTAGGCAACAGAGGATTCTGTCCGAGGTTGAAACTTCGCCCAGTCCACAACCGAGTCCAGCCGGGAGTCCTCAGATAAGAAGAAAACTGGCGCACACAGTGTCACTTCCGGCCACGTCAATTGGTCATTACTTGTCCACTATGGGCATTCACACACAGAACAAAGTCAACATGGATAACAACGACACACAACGAATGGTGGGCCGTTTAAGGAAAAAGTCAATCGACGATGACGAAATTTACGTCAAGAAACACCGCGAAACTTCAGTGTCACTGAAATTTGAAGGCGACATCGAAAGGGAAAACGCGGAGTGCCTGGCCGCGGATATCGCAGAATTTTTAAACAATCGCAGAAAAAGATCTCGTGCAGGCACAATGCCGAGCCCGCGGTCGATTGCGGAAAACCCTAAAGAAGAACACCTGTCCGCGGATGAAGATGATGCCGTTTTCACGCAAGCTCGGACAACACGTGCACGACGAGGGTCCGCTGTCGTGTCCATGCCTGGGGACCATTATCAGATGGACCTTCATGTGCTTCAGGGGGAGCGAATGGGAAAGACCTTAAGTGTCATACGTGAGAAGAAGGAGCTCTCGGGCTCATCTACATCACTCAACAGTATTGATCCCGAGAAAAGATCACGATGGTCAATTCTCAGACGAAATAAAAAGATGTTGTTAATGAAAGACAAACCCAGGCAGGGTGAAGATTTCAGAGAAAGCTTGGCACGCATGAGGGAGAACCCAAAAGCCATTGTGGAACATGAACTGTCCGAGTTTAAGAACAGTCACTGGACTCGGCTAATGGGCCAGAGTATAGAGAGAAGTCCGAGGAGGCCTCGGTCAGACGGCATCAGCACGCTGTCTGATCACGAGACCAGAAGACGCGAGGCAGTATGGGAAGTGTTTCACAGCGAAGTTGTTTACCTGATGAGTCATCTGTTGGTTCTTAAAGAGGTGTTCCTTGAACCTTTAAAAGAGATTCAACAAATGGGTCATCTACAGCATGTGGACGTCAACAAAATCTTCTGTAATCTTCAGGACCTGTGTGAGGTCAGCACGAGATTCGCCAAGAATCTTCTCCGCGTATTCCAAAGTGAACAACCCACACAGTTCGGAAGTACTGCATCTGTAGTCTCTGCCTTTACAGAATTCAGTCGGATAGTCCACCCTCAGTATCAGAAGTATTGTCTGAATTACTCCAAAGCTCTTAATTATCTGGACTCACTGAAAAAGGACGAGGACTTCCAGGAGTTTATGAAGTGGTGTGATTCCGACAGTAGATGTAACAGACTTCAAATCACCGATCTCTTAGTGGCGCCTCTACAGCATCTCACCAAGTATCCTCTGTTACTCAAGAACATCAGAAAACGAACGGCTGAAGGAGACGAACAGCACAGCTCTCTTACCTCCATTATTAAGGCTGTAGAGCTTTCAATACAGGAGCTGGAAGGTAAAGTAAAGTCTCGAGCAAACTACGAAAGGTTACAAGAACTTCAAAGTAGTTTAGTTTGGCCTTCTATTACTGAGTTGGATCCAAAGACTTATGTACCTGAGTTCCTAAGAGGCATTTTGTCAAAACAGCCCTGTGAGAGTCTATTAGCCAGTCCTAAGAGACAGCTGCTGTACGAAGGACCGCTAACTTTACTTGAAAATACTAAAGTCGATGTGTACGCTTTTCTATTTGACGACATGCTTCTTCTAACAAGATTCCGTAAACTTCAACTAAAAGTGAATAAGAAACTGAATCTGGCCGGGATGACAGATAGTCCCCCACCCACCCCTCCCGTGGTCAGGCGGAGCATGTCTGGAGCCCAGTACACAGTTTATAAACAGCCAATACCGCTGGACAGATTCATCATCATTGATGCCGAAGCCACACACGCAGGAAGCACGTTAAAGAACTCATTCATAATCATCCATTACAGCAGATTCAAACAAACAGTTGGACTTTACACCTTACAAGCACCATCACAGAACCTCAAGGAAACCTGGACCAGTACGCTAAAAGCGGCTCAGAGTAAATGGTCAGAGGCGGTGGCTCTAGAACTAGCAGCAGAGACAGAAAAGATGAACGCTATTCAAACCATCAGTGAAGGAGAAGTGGAGCAAGACACGAGTCCTAAATCACCAGATGACACTGTTATGAGTCAAACTCAAATACTGTCTTATTATAAACCCATTGAATCACAGTGCTGA

Transcript

OS493_012277-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZR37	Pleckstrin homology domain-containing family G member 7 OS=Homo sapiens OX=9606 GN=PLEKHG7 PE=1 SV=2
Q6RFZ7	Pleckstrin homology domain-containing family G member 5 OS=Rattus norvegicus OX=10116 GN=Plekhg5 PE=1 SV=1
Q66T02	Pleckstrin homology domain-containing family G member 5 OS=Mus musculus OX=10090 GN=Plekhg5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002259 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF16652 all species →	PH_13	Pleckstrin homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR040181 all species →	Family	Pleckstrin homology domain-containing family G member 5/7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13217 all species →	PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012277-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_012277-T1 global co-expression network