Gene detail

Detailed information of OS493_012280-T1 in Lophelia pertusa

Genomic Location: scaffold_32:466748...475945
NR annotation: KAJ7385951.1, Interferon- developmental regulator 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12894	Interferon-related developmental regulator 2 OS=Homo sapiens OX=9606 GN=IFRD2 PE=1 SV=4
P0DX19	Interferon-related developmental regulator 2 OS=Oryctolagus cuniculus OX=9986 GN=IFRD2 PE=1 SV=1
Q5S1U6	Interferon-related developmental regulator 1 OS=Sus scrofa OX=9823 GN=IFRD1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007805 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05004 all species →	IFRD	Interferon-related developmental regulator (IFRD)	Repeat	Interproscan
PF04836 all species →	IFRD_C	Interferon-related protein conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007701 all species →	Domain	Interferon-related developmental regulator, N-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR039777 all species →	Family	Interferon-related developmental regulator	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR006921 all species →	Domain	Interferon-related developmental regulator, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12354 all species →	INTERFERON-RELATED DEVELOPMENTAL REGULATOR	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_012280-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012280-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012280-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

212.0Max TPM

66.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	35.25	53.42
polyp at pH7 6	18	18	40.33	69.28
coral polyp · control treatment	16	16	64.74	169.09
coral polyp · oil and dispersant treatment	16	16	113.65	170.57
coral polyp · oil treatment	16	16	50.43	86.66
coral polyp · dispersant treatment	16	16	131.77	212.03
Polyp	10	10	15.88	34.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.86
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.80
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.83
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.97
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.48
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.48
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.05
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.41
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	169.09
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.25
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.75
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.19
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.84
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	170.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	161.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	143.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	143.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	142.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	124.11
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.68
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.89
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.65
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.18
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.30
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.76
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.26
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	212.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	206.74
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	199.52
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	193.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	189.54
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	176.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	142.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	124.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	119.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.93
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.91
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	22.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.59
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.60

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.