Gene detail

Detailed information of OS493_012306-T1 in Lophelia pertusa

Genomic Location: scaffold_32:824361...826222
NR annotation: KAJ7385974.1, hypothetical protein OS493_012306 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00462	Beta-mannosidase OS=Homo sapiens OX=9606 GN=MANBA PE=1 SV=3
Q29444	Beta-mannosidase OS=Bos taurus OX=9913 GN=MANBA PE=1 SV=1
Q95327	Beta-mannosidase OS=Capra hircus OX=9925 GN=MANBA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003725 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17753 all species →	Ig_mannosidase	Ig-fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR041625 all species →	Domain	Beta-mannosidase, Ig-fold domain	Interproscan
IPR036156 all species →	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_012306-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_012306-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012306-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012306-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

42.3Max TPM

16.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.02	24.21
polyp at pH7 6	18	18	16.22	29.67
coral polyp · control treatment	16	16	18.38	30.94
coral polyp · oil and dispersant treatment	16	16	10.80	15.09
coral polyp · oil treatment	16	16	17.69	26.12
coral polyp · dispersant treatment	16	16	12.84	22.98
Polyp	10	10	23.40	42.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.52
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.61
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.05
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.71
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.81
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.47
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.60
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.83
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.42
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.49
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.29
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.76
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.87
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.87
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.34
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.91
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.41
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.99
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.69
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.40
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.96
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.82
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.02
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.12
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.71
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.57
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.47
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.32
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	42.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	33.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	33.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	27.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.73
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.91
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.14
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.