Gene detail

Detailed information of OS493_012423-T1 in Lophelia pertusa

Genomic Location: scaffold_32:2109314...2113515
NR annotation: KAJ7386083.1, hypothetical protein OS493_012423 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010088 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_012423-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR016719 all species →	Family	Guided entry of tail-anchored proteins factor CAMLG	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15026 all species →	CALCIUM-SIGNAL MODULATING CYCLOPHILIN LIGAND CAML	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043529 all species →	Cellular Component	GET complex	Interproscan
GO:0071816 all species →	Biological Process	tail-anchored membrane protein insertion into ER membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012423-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012423-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

26.4Max TPM

9.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.91	22.35
polyp at pH7 6	18	17	9.60	18.25
coral polyp · control treatment	16	16	10.89	21.92
coral polyp · oil and dispersant treatment	16	16	11.16	26.44
coral polyp · oil treatment	16	16	9.58	17.26
coral polyp · dispersant treatment	16	16	6.76	16.13
Polyp	10	10	8.65	14.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.35
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.60
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.67
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.25
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.55
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.19
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.72
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.08
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.94
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.42
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.47
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.56
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.97
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.35
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.12
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.29

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.