Gene detail

Detailed information of OS493_012431-T1 in Lophelia pertusa

Genomic Location: scaffold_32:2254042...2260711
NR annotation: KAJ7386090.1, dioxygenase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VWQ0	Lysine-specific demethylase 9 OS=Homo sapiens OX=9606 GN=RSBN1 PE=1 SV=2
Q80T69	Lysine-specific demethylase 9 OS=Mus musculus OX=10090 GN=Rsbn1 PE=1 SV=3
Q6PCB5	Lysine-specific demethylase RSBN1L OS=Homo sapiens OX=9606 GN=RSBN1L PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007519 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_012431-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR026306 all species →	Family	RSBN1/Dpy-21	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13354 all species →	ROUND SPERMATID BASIC PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22610	RSBN1, KDM9; lysine-specific demethylase 9	EC:1.14.11.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012431-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

28.4Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.26	14.79
polyp at pH7 6	18	18	7.91	11.14
coral polyp · control treatment	16	16	12.33	28.35
coral polyp · oil and dispersant treatment	16	16	12.50	17.90
coral polyp · oil treatment	16	16	10.74	14.94
coral polyp · dispersant treatment	16	16	10.07	15.65
Polyp	10	9	3.70	6.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.79
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.08
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.02
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.43
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.99
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.12
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.04
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.52
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.06
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.04
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.29
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.81
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.35
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.89
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.59
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.75
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.22
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.65
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.56
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.29
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.32
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.65
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.71
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.28
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.