Detailed information of OS493_012432-T1 in Lophelia pertusa

Genomic Location: scaffold_32:2261460...2312453
NR annotation: KAJ7386091.1, Dedicator of cytokinesis protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8CIQ7Dedicator of cytokinesis protein 3 OS=Mus musculus OX=10090 GN=Dock3 PE=1 SV=1
Q8IZD9Dedicator of cytokinesis protein 3 OS=Homo sapiens OX=9606 GN=DOCK3 PE=1 SV=1
Q14185Dedicator of cytokinesis protein 1 OS=Homo sapiens OX=9606 GN=DOCK1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001155 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14429
all species →
DOCK-C2C2 domain in Dock180 and Zizimin proteinsDomainInterproscan
PF20422
all species →
DHR-2_Lobe_BDHR-2, Lobe BDomainInterproscan
PF07653
all species →
SH3_2Variant SH3 domainDomainInterproscan
PF06920
all species →
DHR-2_Lobe_ADHR-2, Lobe ARepeatInterproscan
PF20421
all species →
DHR-2_Lobe_CDHR-2, Lobe CRepeatInterproscan
PF16172
all species →
DOCK_NDOCK N-terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042455
all species →
Homologous_superfamilyDedicator of cytokinesis, N-terminal, subdomain 1Interproscan
IPR043161
all species →
Homologous_superfamilyDedicator of cytokinesis, C-terminal, lobe AInterproscan
IPR027007
all species →
DomainC2 DOCK-type domainInterproscan
IPR046770
all species →
DomainDOCKER, Lobe BInterproscan
IPR026791
all species →
FamilyDedicator of cytokinesisInterproscan
IPR001452
all species →
DomainSH3 domainInterproscan
IPR043162
all species →
Homologous_superfamilyDedicator of cytokinesis, C-terminal, lobe CInterproscan
IPR046769
all species →
DomainDOCKER, Lobe AInterproscan
IPR036028
all species →
Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR027357
all species →
DomainDOCKER domainInterproscan
IPR035892
all species →
Homologous_superfamilyC2 domain superfamilyInterproscan
IPR046773
all species →
DomainDOCKER, Lobe CInterproscan
IPR032376
all species →
DomainDedicator of cytokinesis, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45653
all species →
DEDICATOR OF CYTOKINESISInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005085
all species →
Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0007264
all species →
Biological Processsmall GTPase-mediated signal transductionInterproscan
GO:0031267
all species →
Molecular Functionsmall GTPase bindingInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_012432-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012432-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples
110TPM > 0
7Conditions
34.7Max TPM
17.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
polyp at pH7 9 18 18 16.46 23.62
polyp at pH7 6 18 18 16.87 22.57
coral polyp · control treatment 16 16 22.00 34.73
coral polyp · oil and dispersant treatment 16 16 20.39 32.40
coral polyp · oil treatment 16 16 19.35 27.05
coral polyp · dispersant treatment 16 16 13.45 22.32
Polyp 10 10 9.44 17.74

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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