Gene detail

Detailed information of OS493_012513-T1 in Lophelia pertusa

Genomic Location: scaffold_33:46877...49483
NR annotation: KAJ7379767.1, hypothetical protein OS493_012513 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DF50	Claspin OS=Xenopus laevis OX=8355 GN=clspn PE=1 SV=2
Q9HAW4	Claspin OS=Homo sapiens OX=9606 GN=CLSPN PE=1 SV=3
Q80YR7	Claspin OS=Mus musculus OX=10090 GN=Clspn PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006827 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_012513-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR024146 all species →	Family	Claspin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14396 all species →	CLASPIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0010997 all species →	Molecular Function	anaphase-promoting complex binding	Interproscan
GO:0032147 all species →	Biological Process	activation of protein kinase activity	Interproscan
GO:0033314 all species →	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012513-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012513-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

49.6Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.02	4.17
polyp at pH7 6	18	16	1.80	4.15
coral polyp · control treatment	16	16	9.03	49.63
coral polyp · oil and dispersant treatment	16	16	7.49	47.54
coral polyp · oil treatment	16	16	6.45	15.63
coral polyp · dispersant treatment	16	16	3.81	11.82
Polyp	10	6	3.22	13.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.73
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.61
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.20
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.33
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.76
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.16
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.53
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.12
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.74
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.20
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.64
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.29
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.97
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.44
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.