Gene detail

Detailed information of OS493_012535-T1 in Lophelia pertusa

Genomic Location: scaffold_33:269494...282615
NR annotation: KAJ7379789.1, Ral GTPase-activating protein subunit alpha-1, partial [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_012535-T1

ATGTTCCATAACAGGAGAGCACATCCGGACATCAAGAAAACTACGCACAGATTTATAGATCCCAAAAAGGAGAGCCATTCTAGGCTGCGAGCGCTGCGAACCCTGCTAGATTACTTTGATTCGTCCGACTCCAGGATATTCTTCAACAGTCATTATTCCGAGATATTCTACGTGTTTCAAGATGTGTTCTCCACGGTTGAAGCAAACCTCAAGACGAAAGGGCATAAATCACAACGAGAAGACCTCGATTCAGTTCTCTTCATTTTCGAGAAAATCTTGCTCTATCTCCCTGAACTGATTCACAAAAGATGGCAGTTCAACAGCATAGGTCGGATAATGCGAAAGCTTCTTCATCATGGAAATGCACTCAAGCTGCGACGCGAGGGTGCTCGGCTCTTCATGCTGTGGTTCCAAGTGTTACAGGACAACTCAGATGAGTTCTGCCAGCTTGTCTATGCATGTCTGATTCCTGGTTTTCCGAATCCTGTTGACAGTATTGACTGGAGCAAGAGCAAGCTGTCTAAAGCTTGTGCACAGGAAATATGGGTGTCAATCAGTGACACAGGATCAAGAGAGCAATTCGCTTCTTCCAGCAAGATGCATTTGTCTTCTGATAGGGAGAGTGAAGAGTGGTGTGTACAAGATGATGTAGGACCAATCTTTCCAGCAAATCCAAATGAAAGGATACCGGCACCAGAAGCCTTGACAAAGTTCTTCCTGGACAGGGTTCTGGATTGTATGAGTACTCAGCTTGTTCTGATTGAATGGATGGATAAAAAAACAAGAGAATATGCATTCTATTTCTTGTTTGAAAACTTCAAAAAGTTCTATCTGCCGCACATCTTTCAAGACTGGAATCCTTCCAGATTGCTCTATCAGTCTACCCCTGTTGCACAAGTTCCACAAAGTAAATCCAAAACAGCTAACAGTGAATCAGACGCACGTACACCTTTTATGACCAATGCTAGAGAATCTGTCCTGCGATGGTTTGTCGCCTTCACCGTCAGGTTCAAGAGAACCGATAGTGCCTCGGAATCATCAAATGTCAATCAATCTGTTGTGTCGATATCGTCAACGGAAAGTAGCGAGCCGGGTTCCCCTTTAGCAGGAACTGATGCCAACAGGCTTAGTCCGGCTCGTAACAAGGAGTACTTGCAAGATGCTAGCGAAGTGATCAGAAAGGTGTTGTACTCCACCAGGGCCAACATACGACTCCTTCACGAGGTTCTACGTCAGGGATTTATTCTTCCATCCAGACATTTAAGCACCATCAGGCAGGTCCTGTTGGTGTACCATGAATGGCTCAGGAATCCTGAAAAACCCATCTTCATGCAAGAACCTGATCGAGATGTACTGGCCTCCTTGGATGTCACAGATGCCGAGAATTACAGTCTGCAAAGTCCCATCAGAAGCTTGTCGTATACTTACGCTGTAGATAAAGTAAGAGAGAAAGTATTCCGGCTGCCGCATGAAGACGTGAGAGCTGGTTTCCAGGCAAATCTGAGGCTTTTTATTTTACATTCTGCTTCTGTTTTTCTTGTGGAAGAGGATGCAATATATTTGGACAATCAGGTTGATATCTGCAAACGAGTCATCCATCTATACCGCAATGTTGTGTTAGAAGTTGAAATGGAGTCAACCACTTGGGAGCAGATGTTAGAGGCTCTCCTTGAAGCTTCAAGGCATCTCTTGATACCTGAAATGTTGAAGAACAAAGCTGGGGCAATAGCCAGACAAGTAGCAGGGAGCTTACTTCAGACTGTGTTTGTAACATGGATTCGAGCCAGTCTGAAAGTGAATGTGCCGATCTCATTGTGGGACAAGTGTTTAGATGTTATTTCATCCGCAACTCACTGGCAGGAAATGATCTCTGAGTGGAGTGTAACTATGGAAACCTTAACTAGAGTGATGGCAAGAACTGTCTATGGGTTAGACATGGGTGATCTTCCTCTAGAAAGACTTACAGAACAGAAACGTAAAAGACGAGCTCCTTTACAACAGGAAAGGCTGCAATTTAACAAGGCTTCTTTCTCCCGGTGGAGTCGGATGGACAAATCAAACAGTCCCAAGCAAATTAGGTCAAGATTAGCGAAAACCGATGAAAATGAAAAATCTGGCTTGCCAGTGTTACGACAACTGCCCAAGCCTTCAGTGATGTCAAGTCATGAAGGGAATCAATTGTTATCCAGTATCTCCCCTAAACACCCAAGGATGTTATCAAGTACAAACAGCGCTTTCTTCCCCTCGACTACAACAGGTGATAATGAGTCTCAGGCTATAAGAAGTGTTGCTTCGTCTCCTGCTGTTGCT

Transcript

OS493_012535-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O55007	Ral GTPase-activating protein subunit alpha-1 OS=Rattus norvegicus OX=10116 GN=Ralgapa1 PE=1 SV=2
Q6GYP7	Ral GTPase-activating protein subunit alpha-1 OS=Mus musculus OX=10090 GN=Ralgapa1 PE=1 SV=1
Q6GYQ0	Ral GTPase-activating protein subunit alpha-1 OS=Homo sapiens OX=9606 GN=RALGAPA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002404 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20412 all species →	RALGAPB_N	RALGAPB N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046859 all species →	Domain	Ral GTPase-activating protein subunit alpha/beta, N-terminal domain	Interproscan
IPR027107 all species →	Family	Tuberin/Ral GTPase-activating protein subunit alpha	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10063 all species →	TUBERIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012535-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_012535-T1 global co-expression network