Gene detail

Detailed information of OS493_012575-T1 in Lophelia pertusa

Genomic Location: scaffold_33:667873...673055
NR annotation: KAJ7379827.1, Glucose-6-phosphatase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z186	Glucose-6-phosphatase 2 OS=Mus musculus OX=10090 GN=G6pc2 PE=1 SV=1
Q9NQR9	Glucose-6-phosphatase 2 OS=Homo sapiens OX=9606 GN=G6PC2 PE=1 SV=1
O42153	Glucose-6-phosphatase catalytic subunit 1 OS=Haplochromis nubilus OX=51172 GN=g6pc1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003026 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01569 all species →	PAP2	PAP2 superfamily	Family	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036938 all species →	Homologous_superfamily	Phosphatidic acid phosphatase type 2/haloperoxidase superfamily	Interproscan
IPR000326 all species →	Domain	Phosphatidic acid phosphatase type 2/haloperoxidase	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12591 all species →	GLUCOSE-6-PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004346 all species →	Molecular Function	glucose-6-phosphatase activity	Interproscan
GO:0006094 all species →	Biological Process	gluconeogenesis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0051156 all species →	Biological Process	glucose 6-phosphate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012575-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012575-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

32.5Max TPM

17.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.46	27.68
polyp at pH7 6	18	18	17.83	32.47
coral polyp · control treatment	16	16	19.43	24.78
coral polyp · oil and dispersant treatment	16	16	18.52	27.96
coral polyp · oil treatment	16	16	18.77	27.13
coral polyp · dispersant treatment	16	16	14.70	24.05
Polyp	10	10	12.26	18.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.91
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.07
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.18
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.48
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.33
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.56
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.14
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.39
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.09
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.68
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.28
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.24
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.28
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.92
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.96
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.28
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.61
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.93
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.83
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.60
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.43
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.29
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.35
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.85
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.08
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.31
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.87

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.