Gene detail

Detailed information of OS493_012657-T1 in Lophelia pertusa

Genomic Location: scaffold_33:1706803...1711430
NR annotation: KAJ7379898.1, cardiolipin synthase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U2V5	Cardiolipin synthase (CMP-forming) OS=Rattus norvegicus OX=10116 GN=Crls1 PE=2 SV=1
Q80ZM8	Cardiolipin synthase (CMP-forming) OS=Mus musculus OX=10090 GN=Crls1 PE=1 SV=1
Q9UJA2	Cardiolipin synthase (CMP-forming) OS=Homo sapiens OX=9606 GN=CRLS1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006287 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01066 all species →	CDP-OH_P_transf	CDP-alcohol phosphatidyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000462 all species →	Family	CDP-alcohol phosphatidyltransferase	Interproscan
IPR050324 all species →	Family	CDP-alcohol phosphatidyltransferase class-I	Interproscan
IPR043130 all species →	Homologous_superfamily	CDP-alcohol phosphatidyltransferase, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14269 all species →	CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008654 all species →	Biological Process	phospholipid biosynthetic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016780 all species →	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0032049 all species →	Biological Process	cardiolipin biosynthetic process	Interproscan
GO:0043337 all species →	Molecular Function	cardiolipin synthase (CMP-forming)	Interproscan
GO:0046474 all species →	Biological Process	glycerophospholipid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012657-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012657-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

121.8Max TPM

59.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	87.85	113.19
polyp at pH7 6	18	18	90.88	121.54
coral polyp · control treatment	16	16	53.37	92.37
coral polyp · oil and dispersant treatment	16	16	34.41	79.89
coral polyp · oil treatment	16	16	51.35	103.82
coral polyp · dispersant treatment	16	16	20.73	42.60
Polyp	10	10	77.38	121.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	113.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	108.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	105.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.99
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.94
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	85.62
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.29
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.33
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.19
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	121.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	115.01
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	113.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	102.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	94.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.52
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.95
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.15
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.71
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.94
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.41
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.37
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.25
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.48
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.40
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.02
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.32
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.41
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.33
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.28
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.64
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.24
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	121.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	93.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	92.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	89.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	74.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	68.48
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	64.81
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	63.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	60.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	45.78

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.