Gene detail

Detailed information of OS493_012658-T1 in Lophelia pertusa

Genomic Location: scaffold_33:1711700...1713451
NR annotation: KAJ7379899.1, Complex I intermediate-associated protein 30, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0MQ83	Complex I intermediate-associated protein 30, mitochondrial OS=Gorilla gorilla gorilla OX=9595 GN=NDUFAF1 PE=2 SV=1
Q9VAI1	Complex I intermediate-associated protein 30, mitochondrial OS=Drosophila melanogaster OX=7227 GN=NdufAF1 PE=1 SV=1
Q0MQ82	Complex I intermediate-associated protein 30, mitochondrial OS=Pongo pygmaeus OX=9600 GN=NDUFAF1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006953 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08547 all species →	CIA30	Complex I intermediate-associated protein 30 (CIA30)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013857 all species →	Domain	NADH:ubiquinone oxidoreductase intermediate-associated protein 30	Interproscan
IPR039131 all species →	Family	Complex I intermediate-associated protein 30, mitochondrial	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13194 all species →	COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006120 all species →	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan
GO:0010257 all species →	Biological Process	NADH dehydrogenase complex assembly	Interproscan
GO:0032981 all species →	Biological Process	mitochondrial respiratory chain complex I assembly	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18159	NDUFAF1, CIA30; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012658-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

36.6Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.71	15.74
polyp at pH7 6	18	16	8.37	14.09
coral polyp · control treatment	16	16	9.29	31.70
coral polyp · oil and dispersant treatment	16	16	7.17	36.62
coral polyp · oil treatment	16	16	7.32	12.51
coral polyp · dispersant treatment	16	15	3.27	8.43
Polyp	10	9	6.99	13.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.27
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.76
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.84
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.91
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.54
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.75
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.62
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.50
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.96
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.69
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.37
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.82
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.97
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.67
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.36
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.73
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.