Gene detail

Detailed information of OS493_012666-T1 in Lophelia pertusa

Genomic Location: scaffold_33:1858000...1859790
NR annotation: KAJ7379906.1, hypothetical protein OS493_012666 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10351	Xanthine dehydrogenase OS=Drosophila melanogaster OX=7227 GN=ry PE=2 SV=2
P22811	Xanthine dehydrogenase OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=ry PE=3 SV=2
P91711	Xanthine dehydrogenase OS=Drosophila subobscura OX=7241 GN=Xdh PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0039479 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00941 all species →	FAD_binding_5	FAD binding domain in molybdopterin dehydrogenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR016208 all species →	Family	Aldehyde oxidase/xanthine dehydrogenase-like	Interproscan
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR002346 all species →	Domain	Molybdopterin dehydrogenase, FAD-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45444 all species →	XANTHINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012666-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012666-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

73TPM > 0

7Conditions

6.8Max TPM

1.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	7	0.78	3.31
polyp at pH7 6	18	12	1.89	6.85
coral polyp · control treatment	16	14	1.71	3.36
coral polyp · oil and dispersant treatment	16	11	1.84	5.72
coral polyp · oil treatment	16	14	1.59	3.22
coral polyp · dispersant treatment	16	11	1.49	6.64
Polyp	10	4	0.70	2.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.54
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.10
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.01
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.83
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.04
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.70
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.88
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.