Gene detail

Detailed information of OS493_012668-T1 in Lophelia pertusa

Genomic Location: scaffold_33:1872779...1873516
NR annotation: KAJ7379908.1, hypothetical protein OS493_012668 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T0B9	CCAAT/enhancer-binding protein gamma OS=Bos taurus OX=9913 GN=CEBPG PE=2 SV=1
P53567	CCAAT/enhancer-binding protein gamma OS=Homo sapiens OX=9606 GN=CEBPG PE=1 SV=1
P53568	CCAAT/enhancer-binding protein gamma OS=Mus musculus OX=10090 GN=Cebpg PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002495 (this species only)
Transcription factor family	TF_bZIP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07716 all species →	bZIP_2	Basic region leucine zipper	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR031106 all species →	Family	CCAAT/enhancer-binding protein C/EBP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23334 all species →	CCAAT/ENHANCER BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012668-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012668-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

110,439.1Max TPM

65,747.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	93,520.45	104,646.80
polyp at pH7 6	18	18	85,343.42	110,439.08
coral polyp · control treatment	16	16	53,721.37	79,951.58
coral polyp · oil and dispersant treatment	16	16	48,274.23	78,337.13
coral polyp · oil treatment	16	16	60,562.85	93,427.23
coral polyp · dispersant treatment	16	16	35,714.55	80,736.02
Polyp	10	10	84,035.48	107,077.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	104,646.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	104,386.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	103,757.49
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	103,462.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	98,751.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	98,013.24
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	97,660.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	97,347.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	97,262.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	97,182.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	97,176.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	97,049.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	90,323.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	90,267.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	88,448.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	88,185.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	64,836.05
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	64,609.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	110,439.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	110,324.14
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	104,205.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	102,855.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	86,152.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	85,954.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	84,649.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	84,492.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	82,074.52
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	81,863.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	79,476.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	79,273.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	78,909.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	78,659.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	73,084.96
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	72,996.89
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	70,526.41
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	70,241.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79,951.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71,723.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70,552.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67,003.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64,315.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54,161.80
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53,370.16
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51,004.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50,632.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49,054.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48,864.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48,629.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46,014.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44,499.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40,322.17
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19,442.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78,337.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72,113.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68,636.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56,926.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56,115.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53,870.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50,711.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45,461.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45,130.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44,999.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39,393.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36,342.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36,068.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31,835.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28,767.33
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27,677.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93,427.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75,997.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71,328.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71,275.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71,202.11
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70,458.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67,319.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67,048.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56,722.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49,801.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48,639.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48,288.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46,662.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44,740.42
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43,618.63
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42,474.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80,736.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62,826.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42,377.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41,471.04
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38,195.63
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35,519.13
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32,949.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31,679.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31,150.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30,841.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29,957.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26,543.56
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23,637.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22,085.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21,104.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20,358.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	107,077.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	99,973.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	97,219.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	84,041.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	82,142.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	82,120.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	76,677.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	72,246.98
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	71,623.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	67,233.30

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.