Detailed information of OS493_012669-T1 in Lophelia pertusa

Genomic Location: scaffold_33:1879606...1881516
NR annotation: KAJ7379909.1, Arp2/3 complex-mediated actin nucleation [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A4IG59WASH complex subunit 1 OS=Danio rerio OX=7955 GN=washc1 PE=2 SV=2
Q8VDD8WASH complex subunit 1 OS=Mus musculus OX=10090 GN=Washc1 PE=1 SV=1
Q5U4A3WASH complex subunit 1 OS=Xenopus laevis OX=8355 GN=washc1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009146 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11945
all species →		WASH_WAHDWAHD domain of WASH complexDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028290
all species →		FamilyWASH1Interproscan
IPR021854
all species →		DomainWASH1, WAHD domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23331
all species →		CXYORF1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005769
all species →		Cellular Componentearly endosomeInterproscan
GO:0006887
all species →		Biological ProcessexocytosisInterproscan
GO:0032456
all species →		Biological Processendocytic recyclingInterproscan
GO:0034314
all species →		Biological ProcessArp2/3 complex-mediated actin nucleationInterproscan
GO:0042147
all species →		Biological Processretrograde transport, endosome to GolgiInterproscan
GO:0043014
all species →		Molecular Functionalpha-tubulin bindingInterproscan
GO:0043015
all species →		Molecular Functiongamma-tubulin bindingInterproscan
GO:0055037
all species →		Cellular Componentrecycling endosomeInterproscan
GO:0071203
all species →		Cellular ComponentWASH complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_012669-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_012669-T1 global co-expression network
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