Gene detail

Detailed information of OS493_012677-T1 in Lophelia pertusa

Genomic Location: scaffold_33:1969899...1980444
NR annotation: KAJ7379917.1, Tyrosine-protein kinase jak2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008269 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR051286 all species →	Family	Janus Kinase (JAK)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45807 all species →	TYROSINE-PROTEIN KINASE HOPSCOTCH	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0004715 all species →	Molecular Function	non-membrane spanning protein tyrosine kinase activity	Interproscan
GO:0005126 all species →	Molecular Function	cytokine receptor binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007259 all species →	Biological Process	cell surface receptor signaling pathway via JAK-STAT	Interproscan
GO:0019221 all species →	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012677-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012677-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

16.5Max TPM

5.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.01	6.29
polyp at pH7 6	18	16	3.69	6.76
coral polyp · control treatment	16	16	8.25	16.50
coral polyp · oil and dispersant treatment	16	16	7.69	16.26
coral polyp · oil treatment	16	16	5.28	9.31
coral polyp · dispersant treatment	16	16	4.96	9.31
Polyp	10	8	1.19	2.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.29
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.53
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.46
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.50
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.46
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.90
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.65
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.92
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.46
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.84
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.30
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.54
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.