Gene detail

Detailed information of OS493_012682-T1 in Lophelia pertusa

Genomic Location: scaffold_33:2018834...2026170
NR annotation: KAJ7379922.1, hippo signaling [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H4B6	Protein salvador homolog 1 OS=Homo sapiens OX=9606 GN=SAV1 PE=1 SV=2
Q8VEB2	Protein salvador homolog 1 OS=Mus musculus OX=10090 GN=Sav1 PE=1 SV=2
A4V8B4	Protein salvador homolog 1 OS=Rattus norvegicus OX=10116 GN=Sav1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007668 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR011524 all species →	Domain	SARAH domain	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR030030 all species →	Family	Scaffold protein salvador	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47522 all species →	SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0035329 all species →	Biological Process	hippo signaling	Interproscan
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan
GO:0043065 all species →	Biological Process	positive regulation of apoptotic process	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16686	SAV1, Sav; scaffold protein salvador	-	Apoptosis - fly	ko04214	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012682-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

16.9Max TPM

8.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.01	13.56
polyp at pH7 6	18	18	7.81	10.13
coral polyp · control treatment	16	16	10.52	16.87
coral polyp · oil and dispersant treatment	16	16	10.15	14.76
coral polyp · oil treatment	16	16	8.16	15.36
coral polyp · dispersant treatment	16	16	7.99	13.34
Polyp	10	10	4.68	7.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.56
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.06
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.43
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.87
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.85
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.71
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.64
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.03
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.48
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.69
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.20
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.51
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.51
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.61
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.21
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.01
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.79
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.16
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.21

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.