Gene detail

Detailed information of OS493_012738-T1 in Lophelia pertusa

Genomic Location: scaffold_33:2506615...2506917
NR annotation: KAJ7379976.1, hypothetical protein OS493_012738 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001176 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03067 all species →	LPMO_10	Lytic polysaccharide mono-oxygenase, cellulose-degrading	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004302 all species →	Domain	Cellulose/chitin-binding protein, N-terminal	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_012738-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_012738-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012738-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012738-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

781.8Max TPM

65.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	52.16	96.90
polyp at pH7 6	18	18	62.65	115.55
coral polyp · control treatment	16	16	51.80	113.83
coral polyp · oil and dispersant treatment	16	15	46.03	152.15
coral polyp · oil treatment	16	16	63.32	169.33
coral polyp · dispersant treatment	16	16	38.67	74.76
Polyp	10	10	190.17	781.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.97
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.73
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.98
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.51
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.92
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.11
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	115.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	113.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.86
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.88
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.66
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.40
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.72
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	112.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.67
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.16
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.22
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.02
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	152.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.82
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	169.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	129.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	127.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	113.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.09
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.42
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.43
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.11
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.68
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	781.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	580.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	188.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	109.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	73.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	51.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	31.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	27.89
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.