Gene detail

Detailed information of OS493_012741-T1 in Lophelia pertusa

Genomic Location: scaffold_33:2516163...2516758
NR annotation: KAJ7379979.1, hypothetical protein OS493_012741 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001159 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03067 all species →	LPMO_10	Lytic polysaccharide mono-oxygenase, cellulose-degrading	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004302 all species →	Domain	Cellulose/chitin-binding protein, N-terminal	Interproscan

PANTHER

No PANTHER signature was detected for OS493_012741-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_012741-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012741-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012741-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

523.9Max TPM

82.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	80.97	149.24
polyp at pH7 6	18	18	87.06	195.29
coral polyp · control treatment	16	16	71.58	134.92
coral polyp · oil and dispersant treatment	16	16	69.83	197.13
coral polyp · oil treatment	16	16	91.37	219.78
coral polyp · dispersant treatment	16	16	59.33	128.88
Polyp	10	10	135.35	523.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	149.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	142.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	99.72
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	93.19
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.95
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.79
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.72
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	195.29
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	176.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	157.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	149.05
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	135.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	134.76
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.94
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.40
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.92
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	98.10
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.89
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.99
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.23
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	197.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	180.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.75
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.82
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.61
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.64
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	219.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	140.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	125.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	115.05
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.98
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.55
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.46
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.74
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.82
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	128.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.65
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.48
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.15
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	523.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	265.93
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	183.43
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	108.64
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	79.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	42.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	42.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	41.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	38.88
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.61

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.