Gene detail

Detailed information of OS493_012763-T1 in Lophelia pertusa

Genomic Location: scaffold_33:2763885...2768809
NR annotation: KAJ7380001.1, hypothetical protein OS493_012763 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007413 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR042496 all species →	Family	Cell growth regulator with RING finger domain protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15379 all species →	CELL GROWTH REGULATOR WITH RING FINGER DOMAIN PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030308 all species →	Biological Process	negative regulation of cell growth	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_012763-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012763-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

15.8Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.87	11.18
polyp at pH7 6	18	18	8.60	12.49
coral polyp · control treatment	16	16	8.88	12.65
coral polyp · oil and dispersant treatment	16	16	7.16	11.67
coral polyp · oil treatment	16	16	8.75	12.00
coral polyp · dispersant treatment	16	16	6.74	10.35
Polyp	10	10	10.44	15.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.18
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.86
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.75
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.48
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.18
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.98
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.21
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.81
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.71
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.07
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.72
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.22
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.65
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.03
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.26
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.05
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.75
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.66
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.71
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.84
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.17
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.17
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.76
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.79
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.54
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.63
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.48
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.20
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.09
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.07
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.76
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.93
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.60
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.