Gene detail

Detailed information of OS493_012945-T1 in Lophelia pertusa

Genomic Location: scaffold_34:1513487...1521867
NR annotation: KAJ7373353.1, hypothetical protein OS493_012945 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009626 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15077 all species →	MAJIN	Membrane-anchored junction protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027816 all species →	Family	Membrane-anchored junction protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35824 all species →	MEMBRANE-ANCHORED JUNCTION PROTEIN MAJIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005639 all species →	Cellular Component	obsolete integral component of nuclear inner membrane	Interproscan
GO:0007129 all species →	Biological Process	homologous chromosome pairing at meiosis	Interproscan
GO:0070197 all species →	Biological Process	meiotic attachment of telomere to nuclear envelope	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25751	MAJIN; membrane-anchored junction protein	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_012945-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

187.1Max TPM

11.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.73	17.15
polyp at pH7 6	18	18	12.39	22.23
coral polyp · control treatment	16	16	18.17	187.12
coral polyp · oil and dispersant treatment	16	16	14.18	148.07
coral polyp · oil treatment	16	16	7.74	15.08
coral polyp · dispersant treatment	16	16	5.07	8.66
Polyp	10	9	14.06	28.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.81
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.56
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.23
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.70
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.50
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.17
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.36
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.10
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.37
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	187.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.04
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.03
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.47
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	148.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.62
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.94
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.64
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.60
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.93
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.63
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.60
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	28.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.12
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.82
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.61
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.