Gene detail

Detailed information of OS493_013002-T1 in Lophelia pertusa

Genomic Location: scaffold_34:2118471...2119285
NR annotation: KAJ7373409.1, N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P56965	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Bos taurus OX=9913 GN=DDAH1 PE=1 SV=3
Q9CWS0	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Mus musculus OX=10090 GN=Ddah1 PE=1 SV=3
O08557	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Rattus norvegicus OX=10116 GN=Ddah1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006632 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19420 all species →	DDAH_eukar	N,N dimethylarginine dimethylhydrolase, eukaryotic	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033199 all species →	Family	Dimethylarginine dimethylaminohydrolase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12737 all species →	DIMETHYLARGININE DIMETHYLAMINOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000052 all species →	Biological Process	citrulline metabolic process	Interproscan
GO:0006525 all species →	Biological Process	arginine metabolic process	Interproscan
GO:0016403 all species →	Molecular Function	dimethylargininase activity	Interproscan
GO:0016597 all species →	Molecular Function	amino acid binding	Interproscan
GO:0045429 all species →	Biological Process	positive regulation of nitric oxide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01482	DDAH, ddaH; dimethylargininase	EC:3.5.3.18	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013002-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

152.2Max TPM

81.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	100.40	145.77
polyp at pH7 6	18	18	104.00	130.47
coral polyp · control treatment	16	16	67.21	146.64
coral polyp · oil and dispersant treatment	16	16	83.24	149.18
coral polyp · oil treatment	16	16	68.43	100.14
coral polyp · dispersant treatment	16	16	49.05	143.01
Polyp	10	10	97.82	152.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	145.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	132.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	131.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	131.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	114.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.81
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.50
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	106.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	98.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.08
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.11
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.31
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	130.47
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	126.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	125.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	122.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	120.40
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	116.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	111.30
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	106.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.61
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.26
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.54
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.15
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.42
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.23
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	146.64
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.40
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.10
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.08
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.58
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.40
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.12
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.45
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.63
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.72
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.92
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.14
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.12
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.16
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.99
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	143.01
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.76
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.50
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.47
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.30
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	152.25
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	108.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	104.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	98.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	97.65
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	95.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	89.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	87.80
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	72.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	70.99

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.