Gene detail

Detailed information of OS493_013009-T1 in Lophelia pertusa

Genomic Location: scaffold_34:2267723...2276814
NR annotation: KAJ7373416.1, hypothetical protein OS493_013009 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0V9S9	Dynein regulatory complex subunit 7 OS=Xenopus tropicalis OX=8364 GN=drc7 PE=2 SV=1
G2HE57	Dynein regulatory complex subunit 7 OS=Pan troglodytes OX=9598 GN=DRC7 PE=2 SV=1
Q2T9M4	Dynein regulatory complex subunit 7 OS=Bos taurus OX=9913 GN=DRC7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004992 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_013009-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR033551 all species →	Family	Dynein regulatory complex subunit 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35249 all species →	DYNEIN REGULATORY COMPLEX SUBUNIT 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan
GO:0048870 all species →	Biological Process	cell motility	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25451	DRC7; dynein regulatory complex subunit 7	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013009-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

81.6Max TPM

28.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.26	53.67
polyp at pH7 6	18	18	29.90	64.79
coral polyp · control treatment	16	16	30.75	80.12
coral polyp · oil and dispersant treatment	16	16	20.25	49.03
coral polyp · oil treatment	16	16	28.44	42.09
coral polyp · dispersant treatment	16	16	18.29	36.65
Polyp	10	10	48.90	81.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.67
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.72
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.96
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.28
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.09
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.80
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.16
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.45
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.22
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.12
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.12
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.49
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.10
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.49
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.58
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.41
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.01
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.85
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.01
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.90
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.40
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.86
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.64
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.42
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.25
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.01
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.01
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.65
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	81.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	64.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	61.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	49.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	46.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	44.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	42.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	39.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	36.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.