Gene detail

Detailed information of OS493_013010-T1 in Lophelia pertusa

Genomic Location: scaffold_34:2277470...2285114
NR annotation: KAJ7373417.1, Dynein regulatory complex subunit 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0V9S9	Dynein regulatory complex subunit 7 OS=Xenopus tropicalis OX=8364 GN=drc7 PE=2 SV=1
Q8IY82	Dynein regulatory complex subunit 7 OS=Homo sapiens OX=9606 GN=DRC7 PE=1 SV=3
G2HE57	Dynein regulatory complex subunit 7 OS=Pan troglodytes OX=9598 GN=DRC7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004992 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_013010-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR033551 all species →	Family	Dynein regulatory complex subunit 7	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35249 all species →	DYNEIN REGULATORY COMPLEX SUBUNIT 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan
GO:0048870 all species →	Biological Process	cell motility	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013010-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013010-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

51.6Max TPM

9.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.55	15.40
polyp at pH7 6	18	17	6.18	10.83
coral polyp · control treatment	16	16	14.66	51.59
coral polyp · oil and dispersant treatment	16	16	9.24	19.15
coral polyp · oil treatment	16	16	12.25	18.44
coral polyp · dispersant treatment	16	16	8.45	15.54
Polyp	10	9	6.23	15.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.12
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.74
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.22
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.64
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.04
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.69
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.28
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.93
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.44
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.04
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.56
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.86
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.07
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.60
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.68
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.10
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.