Gene detail

Detailed information of OS493_013052-T1 in Lophelia pertusa

Genomic Location: scaffold_34:2931769...2932077
NR annotation: KAJ7373457.1, ATP synthesis coupled proton transport [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21571	ATP synthase peripheral stalk subunit F6, mitochondrial OS=Rattus norvegicus OX=10116 GN=Atp5pf PE=1 SV=1
P97450	ATP synthase peripheral stalk subunit F6, mitochondrial OS=Mus musculus OX=10090 GN=Atp5pf PE=1 SV=1
Q8SPH6	ATP synthase peripheral stalk subunit F6, mitochondrial OS=Macaca fascicularis OX=9541 GN=ATP5PF PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011727 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05511 all species →	ATP-synt_F6	Mitochondrial ATP synthase coupling factor 6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036204 all species →	Homologous_superfamily	ATP synthase-coupling factor 6 superfamily, mitochondrial	Interproscan
IPR008387 all species →	Family	ATP synthase-coupling factor 6, mitochondrial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12441 all species →	ATP SYNTHASE COUPLING FACTOR 6, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000276 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	Interproscan
GO:0015078 all species →	Molecular Function	proton transmembrane transporter activity	Interproscan
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0005753 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02131	ATPeF0F6, ATP5J; F-type H+-transporting ATPase subunit 6	-	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013052-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,394.6Max TPM

185.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	176.31	272.68
polyp at pH7 6	18	18	175.35	237.57
coral polyp · control treatment	16	16	229.28	868.11
coral polyp · oil and dispersant treatment	16	16	229.42	1,394.62
coral polyp · oil treatment	16	16	196.73	250.09
coral polyp · dispersant treatment	16	16	97.53	144.40
Polyp	10	10	201.30	307.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	272.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	259.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	225.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	222.16
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	215.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	212.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	181.58
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	169.20
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	163.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	157.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	151.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	150.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	149.52
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	143.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	140.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	137.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	121.13
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	99.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	237.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	227.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	222.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	205.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	204.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	179.13
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	173.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	172.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	169.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	167.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	163.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	160.01
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	157.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	147.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	144.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.97
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	138.75
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	868.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	230.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	225.30
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	211.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	204.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	198.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	194.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	194.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	191.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	187.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	180.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	180.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	169.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	158.07
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	157.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,394.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	205.74
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	205.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	195.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	182.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	175.64
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	160.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	144.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	250.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	246.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	237.77
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	235.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	216.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	209.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	206.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	197.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	196.39
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	193.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	173.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	166.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	165.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	164.54
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	151.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	137.56
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	144.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	140.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	126.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	122.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	307.71
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	281.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	226.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	188.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	185.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	181.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	180.66
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	173.48
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	163.51
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	124.04

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.