Gene detail

Detailed information of OS493_013084-T1 in Lophelia pertusa

Genomic Location: scaffold_35:221648...223627
NR annotation: KAJ7361998.1, hypothetical protein OS493_013084 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q960X8	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Drosophila melanogaster OX=7227 GN=Hrs PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003063 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12210 all species →	Hrs_helical	Hepatocyte growth factor-regulated tyrosine kinase substrate	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024641 all species →	Domain	Hepatocyte growth factor-regulated tyrosine kinase substrate, helical domain	Interproscan
IPR017073 all species →	Family	Hepatocyte growth factor-regulated tyrosine kinase substrate/VPS27	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46275 all species →	HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0031623 all species →	Biological Process	receptor internalization	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013084-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013084-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

639.5Max TPM

77.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.25	26.05
polyp at pH7 6	18	18	16.27	26.08
coral polyp · control treatment	16	16	51.88	130.29
coral polyp · oil and dispersant treatment	16	16	154.53	348.30
coral polyp · oil treatment	16	16	48.40	98.02
coral polyp · dispersant treatment	16	16	233.78	639.50
Polyp	10	10	12.66	17.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.44
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.53
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.10
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.78
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.82
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.80
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.31
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.71
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.70
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.17
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.67
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	130.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.51
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.23
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	348.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	268.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	244.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	218.87
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	162.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	153.81
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	144.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	142.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	141.25
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	138.87
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.69
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.14
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.09
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.27
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.12
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	639.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	339.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	338.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	297.47
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	289.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	280.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	244.86
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	240.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	239.48
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	194.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	173.88
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	145.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	131.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.59
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.35
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.31
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.92

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.