Gene detail

Detailed information of OS493_013096-T1 in Lophelia pertusa

Genomic Location: scaffold_35:337463...338640
NR annotation: KAJ7362009.1, hypothetical protein OS493_013096 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UTA8	Uncharacterized methyltransferase-like C25B8.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25B8.10 PE=3 SV=1
Q9UTA9	Uncharacterized methyltransferase C25B8.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25B8.09 PE=3 SV=1
P9WK00	Uncharacterized methyltransferase MT3445 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT3445 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000862 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08241 all species →	Methyltransf_11	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013216 all species →	Domain	Methyltransferase type 11	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR051052 all species →	Family	Diverse substrate methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44942 all species →	METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013096-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013096-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

92TPM > 0

7Conditions

28.0Max TPM

4.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	9	1.58	4.85
polyp at pH7 6	18	12	2.78	6.99
coral polyp · control treatment	16	16	4.71	10.06
coral polyp · oil and dispersant treatment	16	15	6.51	20.75
coral polyp · oil treatment	16	15	3.40	7.57
coral polyp · dispersant treatment	16	16	7.03	27.95
Polyp	10	9	3.56	8.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.86
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.98
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.25
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.28
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.78
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.20
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.